Commercial clients
Dortmund, Germany
2023-present
Project-based Support
- Analyzed the NGS sequencing data, co-wrote the manuscript after the client’s staff left.
- Helped to set up a new research project where my expertise was needed.
- Project lead (remote)
- Consulting in areas of microbial ecology
- AI tutor/trainer domain expert in biology
Task-based Support
- NGS data management and archiving
- Data entry
- Wrote scripts to automate data processing and analysis workflows
- Wrote protocols
- Negotiated with vendors and obtained attractive price offers for lab equipment and consumables.
- Edited and proofread manuscripts, cover letters, thesis, and website. For substantive edits, I also provided more in-depth suggestions on the science.
Past employment in research support
Aalborg University, Department of Chemistry and Bioscience
Aalborg, Denmark
2017-2022
Research projects:
- Developed and maintained standard and project-specific analytical workflows for NGS data
- Bioinformatics and statistical analysis for primary and collaborative projects
- Consulting service for workflow developments, biostatistics, and data analysis
- Teaching support in molecular biology, microbial ecology, and bioinformatics
Computational infrastructure:
- Systems administrator of the Biotech Section’s bioinformatics servers
- Scientific software installations/updates/patching
- lmod software modules maintenance using Easybuild
- Developed some container-based solutions for bioinformatics projects
- Collaborated with IT support team to migrate the bio-servers to cloud computing
Sequencing infrastructure:
- Responsible for operating and maintaining Illumina MiSeq, HiSeq 2500, cBot platforms and primary data analysis
Functional Genomics Center Zurich
Zurich, Switzerland
2017
- Bioinformatic pipeline development for metagenomes
- Analyzed the effect of diet on animal gut microbiomes
Laboratory Research Technician
Cornell University, Department of Microbiology
Ithaca, NY, United States
2002-2005
- Managed lab supplies and lab safety
- Negotiated with vendors to obtain attractive prices for large equipment
- Supervised lab assistants (hiring, onboarding, timesheet approval, supervision of lab helpers)
- Provided research support within the research group.